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<table border="0" style="width:600px;"> <tbody> <tr> <td><img align="middle" alt="" height="74" src="/image/image_gallery?uuid=a68850d2-bfad-4930-a5a6-7f7b95a955a9&groupId=10207&t=1254839708037" style="margin-right: 5px;" width="121" /></td> <td> <h2>Mercator pipeline for automated sequence annotation</h2> </td> </tr> </tbody> </table> <p style="width: 500px; text-align: justify;"> </p> <p style="width: 500px; text-align: justify;">Using the Mercator web application you can assign MapMan "Bins" to arbitrary DNA or protein input sequences. The output will be a text file mapping each input identifier to one or more Bins. This file can directly be used as a mapping file for the high-throughput data visualization and meta-analysis software MapMan.</p> <p style="width: 500px; text-align: justify;"> </p> <h4 style="width: 500px; text-align: justify;">Mercator4 V2.0</h4> <p>This is the most recent version of Mercator and assigns genes to the most recent MapMan ontology. </p> <ul style="color: rgb(0, 0, 0);"> <li><a href="https://www.plabipd.de/portal/mercator4" target="_blank">Create new Mercator4 job</a></li> <li><a href="https://www.plabipd.de/portal/web/guest/mer" target="_blank">Mecator4 Tutorial</a></li> </ul> <p> </p> <p><span style="color: rgb(0, 0, 0);">If you use </span><span style="color: rgb(0, 0, 0);">Mercator4 V2.0</span><span style="color: rgb(0, 0, 0);"> </span><span style="color: rgb(0, 0, 0);">for your work, please cite:</span></p> <p><a href="https://doi.org/10.1016/j.molp.2019.01.003" target="_blank">MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis. </a></p> <p>Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B </p> <p>Mol Plant. 2019 Jun 3;12(6): 879-892</p> <p> </p> <p> </p> <h4>Mercator 3.6</h4> <p>This is an older version of Mercator which can still be used, but does not reflect recent biological publications.</p> <ul> <li><a href="http://www.plabipd.de/portal/web/guest/mercator-sequence-annotation" target="_blank">Create new Mercator 3.6 job</a></li> <li><a href="/web/guest/tutorial" target="_blank">Tutorial</a></li> </ul> <p> </p> <p>If you use Mercator 3.6 for your work, please cite:</p> <p><a href="http://www.ncbi.nlm.nih.gov/pubmed/24237261" ref="ordinalpos=1&ncbi_uid=24237261&link_uid=24237261&linksrc=docsum_title" target="_blank">Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.</a></p> <div> <p>Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B.</p> <p>Plant Cell Environ. 2013 Nov 15. doi: 10.1111/pce.12231. 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